Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs437264 chr21:47358320 T/C 4.77E-5 249 20.88 35.27 33.9 KM Plot
SARC rs4452178 chr2:70192580 A/C 4.12E-8 251 33.77 31.93 10.72 KM Plot
SARC rs4553926 chr3:38946416 A/C 2.54E-7 258 13.47 37.23 30.73 KM Plot
SARC rs4587749 chr11:71226665 G/T 1.14E-5 257 8.37 25.7 33.48 KM Plot
SARC rs4637784 chr8:129388451 C/G 1.97E-13 257 33.95 23.17 3.97 KM Plot
SARC rs4723312 chr7:33724657 G/A 0 250 1.07 33.2 31.77 KM Plot
SARC rs4756180 chr11:34972154 C/T 6.29E-5 254 20.17 29.88 33.48 KM Plot
SARC rs4756182 chr11:34972552 A/G 6.21E-5 254 20.17 29.87 33.77 KM Plot
SARC rs4818883 chr21:45572368 T/C 3.11E-11 250 4.98 41.33 30.73 KM Plot
SARC rs4821810 chr22:39072098 C/G 7.36E-5 255 31.97 35.72 18.33 KM Plot
SARC rs4843899 chr16:86105623 A/G 0 258 1.07 26.83 33.18 KM Plot
SARC rs4852405 chr2:70229357 A/G 8.52E-5 255 33.08 32.6 18.28 KM Plot
SARC rs4920869 chr5:114958419 G/A 7.87E-6 251 32.88 26.25 4.87 KM Plot
SARC rs4939529 chr11:55470994 A/C 1.45E-6 249 35.67 22.93 13.4 KM Plot
SARC rs4944075 chr11:71204092 T/C 2.22E-5 254 8.62 25.7 33.77 KM Plot